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ABOUT THIS RECORD
ID:
MNEST053297
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11475-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGTCTTGCGTCAGGACCCAA
miRNA*
GGGTCTGGCGTCAGGACCCAAG
mismatches:
0
bulges:
2
View larger
pre-miRNA
TCT
TGGGTCTTGCGTCAGGACCCAA
GGGTAATGGGTCCTGCAGAGGACCTAATTCTCATGGGTCCTGCGTCAAGACTCAATTCTCTT
GGGTCTGGCGTCA
GGACCCAAG
G
dot-bracket secondary structure
.((
(((((((((((((((.((((((
(((...((((((.(((..((((((((.......))))))))..).)).))))))...)))))
)))))))))).))
)))))))))
.
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10841-akr
:
3e-23
microPC
no hits
UniProt
no hits
RFAM
MIR474: 0.000000000007
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record