ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11477-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAATGCCGACGGCATTACCGACGGAT miRNA* CCGTCGGCAATGCCGTCGGTAATTAG mismatches: 3 bulges: 0 |
pre-miRNA
GGTGATTAAATGCCGACGGCATTACCGACGGATAATATACGTCGGTATTACACAGAGAGTTGCAACAAAATTACAAGCCATGCCATAATTACCGACGGAT
TTTCCGTCGGCAATGCCGTCGGTAATTAGCC
dot-bracket secondary structure
(((...(((.(((((((((((((.((((((((.(((...((((((((...........(((..............)))...........)))))))).))
).)))))))).))))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGTGATTAAATGCCGACGGCATTACCGACGGATAATATACGTCGGTATTACACAGAGAGTTGCAACAAAATTACAAGCCATGCCATAATTACCGACGGAT
TTTCCGTCGGCAATGCCGTCGGTAATTAGCC
dot-bracket secondary structure
(((...(((.(((((((((((((.((((((((.(((...((((((((...........(((..............)))...........)))))))).))
).)))))))).))))))))))))).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11902-akr: 2e-49 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
