ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11491-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATAAGTCCACCTAAGGGG miRNA* CCTTAGGTGGACTTATATAA mismatches: 0 bulges: 0 |
pre-miRNA
AGTGGACCTTATATAAGTCCACCTAAGGGGGGTCAGTTAGGGTTTCTTTAAATGACTCTAAACTTATATAAACCCTAAGGGACCCCCTTAGGTGGACTTA
TATAAGACCCACT
dot-bracket secondary structure
(((((..((((((((((((((((((((((((.((..(((((((((...(((.(........).)))...)))))))))..))))))))))))))))))))
))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AGTGGACCTTATATAAGTCCACCTAAGGGGGGTCAGTTAGGGTTTCTTTAAATGACTCTAAACTTATATAAACCCTAAGGGACCCCCTTAGGTGGACTTA
TATAAGACCCACT
dot-bracket secondary structure
(((((..((((((((((((((((((((((((.((..(((((((((...(((.(........).)))...)))))))))..))))))))))))))))))))
))))))..)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12281-akr: 1e-59 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12281-akr from PMRD (MNEST054103) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
