ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11499-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGCATACCAACACTGGTA miRNA* CCAGTGTTGGTATGCACATG mismatches: 0 bulges: 0 |
pre-miRNA
TACTTCTCCATGTGCATACCAACACTGGTAATTCTACACAAACGGTTTATGGAGAATTACCAGTGTTGGTATGCACATGGAGAAGTA
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((.((.((.....)).)).)))))))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TACTTCTCCATGTGCATACCAACACTGGTAATTCTACACAAACGGTTTATGGAGAATTACCAGTGTTGGTATGCACATGGAGAAGTA
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((.((.((.....)).)).)))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11498-akr: 3e-44 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11498-akr from PMRD (MNEST053320) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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