ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11519-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCATTTGCACCTGCATCT miRNA* GTGCAGGTGCAAGTGCAGGT mismatches: 0 bulges: 0 |
pre-miRNA
GCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGA
TATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGC
dot-bracket secondary structure
((.((((((((((((((((((((((((((..((....(((((((((.((....)).))))))))).(((((.((((..(((.....))).))))......
...(....).....))))).)).)))))))))))))))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGA
TATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGC
dot-bracket secondary structure
((.((((((((((((((((((((((((((..((....(((((((((.((....)).))))))))).(((((.((((..(((.....))).))))......
...(....).....))))).)).)))))))))))))))))))))))))).))
SIMILARITIES| miRBase ptc-MIR530b: 8e-83 PMRD ptc-miR530b: 8e-83 microPC miR530: 1e-53 | UniProt no hits RFAM MIR530: 1e-81 |
Identical with: ptc-MIR530b from miRBase (MNEST041510) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
