ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11529-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAAAACTATGTCGCTGCTGATTT miRNA* ATCAGCAGCCAAATTGTGTCGCT mismatches: 5 bulges: 1 |
pre-miRNA
AATCGGCAACGAAAACTATGTCGCTGCTGATTTAGAAATTGGCAACCAAAAACTGTGTTACTACCGATTTAGAAATCAGCAGCCAAATTGTGTCGCTGCC
GATT
dot-bracket secondary structure
((((((((.(((..((.((...(((((((((((..(((((((.(((((.....)).)))....)))))))..)))))))))))...)).)).))).))))
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
AATCGGCAACGAAAACTATGTCGCTGCTGATTTAGAAATTGGCAACCAAAAACTGTGTTACTACCGATTTAGAAATCAGCAGCCAAATTGTGTCGCTGCC
GATT
dot-bracket secondary structure
((((((((.(((..((.((...(((((((((((..(((((((.(((((.....)).)))....)))))))..)))))))))))...)).)).))).))))
))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11581-akr: 0.000000000005 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
