ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11541-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCCGTCGGTATATACCGA miRNA* GGTATAAATTACCGACGGAATAT mismatches: 0 bulges: 3 |
pre-miRNA
CGACGGAATTATTCCGTCGGTATATACCGACAGATTTTGAGATGGAATTATGTCCGTCGGTATAAATTACCGACGGAATATTTCCGTCG
dot-bracket secondary structure
((((((((.((((((((((((((((((((((.(((..(((.......))).))).)))))))))...))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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CGACGGAATTATTCCGTCGGTATATACCGACAGATTTTGAGATGGAATTATGTCCGTCGGTATAAATTACCGACGGAATATTTCCGTCG
dot-bracket secondary structure
((((((((.((((((((((((((((((((((.(((..(((.......))).))).)))))))))...))))))))))))).))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10731-akr: 2e-45 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10731-akr from PMRD (MNEST052553) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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