ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11545-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTTGATCCCAAGTTCTTACCACT miRNA* TGGTAAGAGTTTGAGATTAAGAGAT mismatches: 4 bulges: 0 |
pre-miRNA
GGGAGCAAACCTCTTGATCCCAAGTTCTTACCACTGGACCACCACCTAGATGGTTAGATGATGTAGTTTTTAATCATCTAGTAGGTGGTCCAATGGTAAG
AGTTTGAGATTAAGAGATTTGCTCTC
dot-bracket secondary structure
(((((((((.(((((((((.(((..((((((((.(((((((((..(((((((((((((..........)))))))))))))..))))))))).)))))))
)..))).))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGGAGCAAACCTCTTGATCCCAAGTTCTTACCACTGGACCACCACCTAGATGGTTAGATGATGTAGTTTTTAATCATCTAGTAGGTGGTCCAATGGTAAG
AGTTTGAGATTAAGAGATTTGCTCTC
dot-bracket secondary structure
(((((((((.(((((((((.(((..((((((((.(((((((((..(((((((((((((..........)))))))))))))..))))))))).)))))))
)..))).))))))))).)))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11546-akr: 9e-39 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10734-akr from PMRD (MNEST052556) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
