ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11560-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAAAGACCTTCAGCTAGTG miRNA* CTAGCTGGAGGTCTTTATTTA mismatches: 1 bulges: 0 |
pre-miRNA
GAAGTTTAGACAAAGACCTTCAGCTAGTGGCTCAGACAGTCAAAGTGACATTAGTGGTGCATAGAGCTATAAACCCATTAGCCGCTAGCTGGAGGTCTTT
ATTTATACCTC
dot-bracket secondary structure
((.((.((((.(((((((((((((((((((((......(((.....)))....(.(((..(((....)))..))))...)))))))))))))))))))))
.)))).)).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GAAGTTTAGACAAAGACCTTCAGCTAGTGGCTCAGACAGTCAAAGTGACATTAGTGGTGCATAGAGCTATAAACCCATTAGCCGCTAGCTGGAGGTCTTT
ATTTATACCTC
dot-bracket secondary structure
((.((.((((.(((((((((((((((((((((......(((.....)))....(.(((..(((....)))..))))...)))))))))))))))))))))
.)))).)).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
