miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST053383
species: Populus trichocarpa
miRNA family: MIRf312
source: PMRD, original name: ptc-miRf11561-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTATTAAACCCGGACCGGTCC

miRNA*
CCTGGGCCGGGTTTAATAACT

mismatches: 4
bulges: 0

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pre-miRNA
AGCCGGTCTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGTCCCGGGTCGACCCGCCGGCCTGGGCCGGGTTTAATAACTGTGGTT

dot-bracket secondary structure
(((((....(((((((((((((.((((....(((..(((((((((((....).))))))))))..))))))).)))))))))))))...)))))

SIMILARITIES

miRBase no hits

PMRD ptc-miRf10974-akr: 6e-33

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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