ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11565-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCGAAATTGTGATTCGCTGCCG miRNA* GCAGCGAACCAGTTTTCGCTGCCG mismatches: 1 bulges: 3 |
pre-miRNA
GTTCAGCAGCGAAATTGTGATTCGCTGCCGAAACTGTGTCGGCTGCAGTGAATTAACATTCGATGTCGAAATTGAGTTGTCTGCAGCGAACCAGTTTTCG
CTGCCGAAT
dot-bracket secondary structure
((((.((((((((((((.(.((((((((.((((((...(((((.....(((((....)))))..))))).....)))).)).)))))))))))).)))))
)))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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GTTCAGCAGCGAAATTGTGATTCGCTGCCGAAACTGTGTCGGCTGCAGTGAATTAACATTCGATGTCGAAATTGAGTTGTCTGCAGCGAACCAGTTTTCG
CTGCCGAAT
dot-bracket secondary structure
((((.((((((((((((.(.((((((((.((((((...(((((.....(((((....)))))..))))).....)))).)).)))))))))))).)))))
)))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12148-akr: 3e-57 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12148-akr from PMRD (MNEST053970) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
