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ABOUT THIS RECORD
ID:
MNEST054299
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf12477-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTCCAACTCCATGTTGGGC
miRNA*
CCAACTCCACGTTGGGCTATG
mismatches:
5
bulges:
1
View larger
pre-miRNA
GACGCATCCG
TGTCCAACTCCATGTTGGGC
TATGGTGCATCCGCGCCCAACCCTATATTGGGTCAGGGACGCGTCCATGC
CCAACTCCACGTTGGGCTAT
G
GTGCGTT
dot-bracket secondary structure
((((((.(((
((((((((.....(((((((
.((((......(((((((.((((......))))..))).)))).))))))
))))).....))))))).))
)
)))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10396-akr
:
1e-56
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10396-akr
from PMRD (
MNEST052218
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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