ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12492-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCCAAAGCTCTTGGGTCTG miRNA* GACCTAAGGTTTTTGGGTCTT mismatches: 3 bulges: 0 |
pre-miRNA
CTCAAGACCCAAAGCTCTTGGGTCTGTCGGCAAGACCCAAGGTTGATGGGTCCTGCATGAGGACCCAAGACTAATAAATCTTGTGTCAGGACCTAAGGTT
TTTGGGTCTTAGG
dot-bracket secondary structure
((.(((((((((((..(((((((((....((((((.....((((..((((((((.....)))))))).))))......))))))....)))))))))..)
)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTCAAGACCCAAAGCTCTTGGGTCTGTCGGCAAGACCCAAGGTTGATGGGTCCTGCATGAGGACCCAAGACTAATAAATCTTGTGTCAGGACCTAAGGTT
TTTGGGTCTTAGG
dot-bracket secondary structure
((.(((((((((((..(((((((((....((((((.....((((..((((((((.....)))))))).))))......))))))....)))))))))..)
)))))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12451-akr: 0.00000009 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
