ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12499-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACCGACGGAATGATTCCGTCGGTA miRNA* CCGACGAAATATTTCCGTCGGTAATT mismatches: 3 bulges: 0 |
pre-miRNA
CGACGGCATTACCGACGGAATGATTCCGTCGGTATATACCGACCGATTTTGAGACGGAATTATGTCCGTCGGTATTAATTACCGACGAAATATTTCCGTC
GGTAATTCCGTTG
dot-bracket secondary structure
((((((.(((((((((((((..(((.((((((((.((((((((.(((..(((.......))).))).))))))))....)))))))).)))..)))))))
)))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGACGGCATTACCGACGGAATGATTCCGTCGGTATATACCGACCGATTTTGAGACGGAATTATGTCCGTCGGTATTAATTACCGACGAAATATTTCCGTC
GGTAATTCCGTTG
dot-bracket secondary structure
((((((.(((((((((((((..(((.((((((((.((((((((.(((..(((.......))).))).))))))))....)))))))).)))..)))))))
)))))).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12192-akr: 3e-57 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
