ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12511-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAGATCCAAGCAACTTGGG miRNA* CAAGTTTCTTGGGTCTGGAAGGA mismatches: 2 bulges: 1 |
pre-miRNA
ATGCCTCTGCCAGATCCAAGCAACTTGGGTTAGGTGCCCCTTTCCAGCCCCAAGTTTCTTGGGTCTGGAAGGAGATGCGT
dot-bracket secondary structure
((((((((.(((((((((((.((((((((...((.........))...)))))))).)))))))))))..))))..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ATGCCTCTGCCAGATCCAAGCAACTTGGGTTAGGTGCCCCTTTCCAGCCCCAAGTTTCTTGGGTCTGGAAGGAGATGCGT
dot-bracket secondary structure
((((((((.(((((((((((.((((((((...((.........))...)))))))).)))))))))))..))))..))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11625-akr: 0.00006 microPC no hits | UniProt no hits RFAM MIR474: 0.0003 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
