ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12516-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTAAACCCGGATCGGCCCGGC miRNA* TGGACCGGTTCGGGTTTGTTAAAA mismatches: 2 bulges: 0 |
pre-miRNA
TTAGCAGTATTATTAAACCCGGATCGGCCCGGCAGGTCGACCCGGGACCCGGTTATCCTAGTGGCTGGACCGGTTCGGGTTTGTTAAAAGACCGGCTAA
dot-bracket secondary structure
.((((.((.(((.((((((((((((((.((((((((..((((.(....).))))..)))....))))).)))))))))))))).)))...))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
TTAGCAGTATTATTAAACCCGGATCGGCCCGGCAGGTCGACCCGGGACCCGGTTATCCTAGTGGCTGGACCGGTTCGGGTTTGTTAAAAGACCGGCTAA
dot-bracket secondary structure
.((((.((.(((.((((((((((((((.((((((((..((((.(....).))))..)))....))))).)))))))))))))).)))...))..)))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10974-akr: 1e-18 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
