ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12522-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGACTGAATTACGGACGGA miRNA* CGTCGGTAAAGCCGTTGGTATT mismatches: 4 bulges: 0 |
pre-miRNA
TCGGTAGTTACCGACTGAATTACGGACGGAAAATTCTCCGTCGGTAATTACAGACTGAATTACAGACGGAAAGTGTCCGTCGGTAATTTCGACCTCAAAA
TACCGACAGAAATATTCCGTCGGTAAAGCCGTTGGTATTTAGCGA
dot-bracket secondary structure
(((.(((.(((((((.(..((((.(((((((.(((.((.(((((((.....((..((((((((.((((((.....)))))).)))).))))..)).....
))))))).))))).))))))).))))..).))))))).))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGGTAGTTACCGACTGAATTACGGACGGAAAATTCTCCGTCGGTAATTACAGACTGAATTACAGACGGAAAGTGTCCGTCGGTAATTTCGACCTCAAAA
TACCGACAGAAATATTCCGTCGGTAAAGCCGTTGGTATTTAGCGA
dot-bracket secondary structure
(((.(((.(((((((.(..((((.(((((((.(((.((.(((((((.....((..((((((((.((((((.....)))))).)))).))))..)).....
))))))).))))).))))))).))))..).))))))).))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11311-akr: 2e-64 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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