ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12528-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGACAGATGTTGAGACGGAATTA miRNA* ATTCCGTCGGTAAGTCTGTTGGTG mismatches: 5 bulges: 0 |
pre-miRNA
TCGGGTAATTCCGACAGATGTTGAGACGGAATTATTTCCGTCGGCAATGTTTACCGACAGAAATAATTCCGTCGGTAAGTCTGTTGGTGTTATCCGA
dot-bracket secondary structure
(((((((((.(((((((((.....((((((((((((((.(((((.........))))).)))))))))))))).....))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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TCGGGTAATTCCGACAGATGTTGAGACGGAATTATTTCCGTCGGCAATGTTTACCGACAGAAATAATTCCGTCGGTAAGTCTGTTGGTGTTATCCGA
dot-bracket secondary structure
(((((((((.(((((((((.....((((((((((((((.(((((.........))))).)))))))))))))).....))))))))).)))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12162-akr: 2e-17 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
