miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST054355
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf12533-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATTCCGATGGAATTACCGACGGA

miRNA*
CGTCGGTAATTCCGTCGGAATTT

mismatches: 1
bulges: 0

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pre-miRNA
TAAATTCCGATGGAATTACCGACGGAAATTAATTGCACCGACAGCAATTAAGTGTCGTCGGTAATTCCGTCGGAATTTA

dot-bracket secondary structure
(((((((((((((((((((((((((...((((((((.......))))))))...)))))))))))))))))))))))))

SIMILARITIES

miRBase no hits

PMRD ptc-miRf12365-akr: 3e-37

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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