ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12534-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTGAAGATGTCAGCTAATT miRNA* TTAGCTGACATCTTTACCAG mismatches: 0 bulges: 0 |
pre-miRNA
CGAGAGGTCTGGTGAAGATGTCAGCTAATTGCCAAGTGGGTATTGAGTTATCCCTCCAAAGTTTGTTTCATCATCTTCTCAATTAGCTGACATCTTTACC
AGACCTCTTG
dot-bracket secondary structure
(((((((((((((((((((((((((((((((...((.((((..((((.((..(.......)..)).))))..)))).)))))))))))))))))))))))
))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGAGAGGTCTGGTGAAGATGTCAGCTAATTGCCAAGTGGGTATTGAGTTATCCCTCCAAAGTTTGTTTCATCATCTTCTCAATTAGCTGACATCTTTACC
AGACCTCTTG
dot-bracket secondary structure
(((((((((((((((((((((((((((((((...((.((((..((((.((..(.......)..)).))))..)))).)))))))))))))))))))))))
))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12188-akr: 6e-58 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11791-akr from PMRD (MNEST053613) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
