ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12535-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTAAACCCGGACCGGTCCAGC miRNA* CGGGCCGGGCCAGGTTTAATAACA mismatches: 4 bulges: 0 |
pre-miRNA
GGTCTTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGCCGGGCCAGGTTTAATAACAGTACC
dot-bracket secondary structure
(((((.((((((((((.((.(((((((.(...((((.....))))...).))))))).)).)))))))))).)).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GGTCTTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGCCGGGCCAGGTTTAATAACAGTACC
dot-bracket secondary structure
(((((.((((((((((.((.(((((((.(...((((.....))))...).))))))).)).)))))))))).)).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11796-akr: 5e-39 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10431-akr from PMRD (MNEST052253) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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