ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12540-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTCCTCCACCATGTGCTAA miRNA* GCACATGGTGGGGCTTGC mismatches: 0 bulges: 3 |
pre-miRNA
GAGTGAGGGGGAGTCCTCCACCATGTGCTAAGTGGGAGATTAGGTAATCCCACTTGCACATGGTGGGGCTTGCTTGTCTC
dot-bracket secondary structure
(((...(((.(((.((.(((((((((((.((((((((..........)))))))))))))))))))))))).)))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GAGTGAGGGGGAGTCCTCCACCATGTGCTAAGTGGGAGATTAGGTAATCCCACTTGCACATGGTGGGGCTTGCTTGTCTC
dot-bracket secondary structure
(((...(((.(((.((.(((((((((((.((((((((..........)))))))))))))))))))))))).)))..)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11622-akr: 1e-36 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12486-akr from PMRD (MNEST054308) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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