ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12542-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGAGGGAATATTTCCGTCGGT miRNA* CGACGAAAATATTCCCTCGATATT mismatches: 2 bulges: 0 |
pre-miRNA
CGGTATATACCGAGGGAATATTTCCGTCGGTAAAATCCCTCGGAAAGTTACCGACGAAAATATTCCCTCGATATTTCCG
dot-bracket secondary structure
(((...(((.(((((((((((((.(((((((((..(((...)))...))))))))).))))))))))))).)))..)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGTATATACCGAGGGAATATTTCCGTCGGTAAAATCCCTCGGAAAGTTACCGACGAAAATATTCCCTCGATATTTCCG
dot-bracket secondary structure
(((...(((.(((((((((((((.(((((((((..(((...)))...))))))))).))))))))))))).)))..)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11351-akr: 8e-35 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
