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ABOUT THIS RECORD
ID:
MNEST054365
species:
Populus tremula
source:
PMRD, original name:
ptr-miR156
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCTCATAGTTCACATCAGAGCCATATAAGGGCTAAAAGATCATTCAGACCTTCACTTAATTTGT
mismatches:
10
bulges:
277
View larger
pre-miRNA
CAT
GCTCATAGTTCACATCAGAGCCATATAAGGGCTAAAAGATCATTCAGACCTTCACTTAATTTGT
TAAGATGAATACATCGCTTCAGCAGTAAGTCAT
CTGGATGGAATTGAAGTCATTCCCCTTTGATGTTCTTAACAGCTGAAACTCTTGAAAGTAACTGCTACCATCAGTGTGACGTCGAGGTATGCACTTGAGA
GTCAGTTGACGGTTGCTCAGTCCGCCAATACTCTGATGAAGCCAGTGGTGAGTTTTGGGGTATAACTTGCAGCACAGACTGAGTGGTGTGATTTGTATGC
ATGGGTTGTTCAAATGAAATAGATTGCGGTTCACGCGAACCCCATGAATTGTT
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
..(
((((.....(((((((..((((...(((((((..((((.(((((((((.....(((((..(((.
...((((....))))....)))...)))))..)
))))))))....(((....)))..))))...))))))).(((((((..(((((..((((....((((((.((..((...))..)))))).))))))))))
))))))))..))))((((((((..((((.((((...((....)).....)))).)))).(((.....)))......)))))))))))))))(((((...(
(((((...(((....))).....(((((.....)))))..)))))).......
..))))).......))))).
SIMILARITIES
miRBase
far-MIR529
:
0.0003
PMRD
pts-miR157
:
7e-178
microPC
miR157
:
0.0003
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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