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ABOUT THIS RECORD
ID:
MNEST054366
species:
Populus tremula
miRNA family:
MIR168
source:
PMRD, original name:
ptr-miR168
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA
miRNA*
CCCGCCTTGCATCAACTGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TCGCTTGGTGCAGGTCGGGAA
CTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGAAAGAGAATTGGAT
C
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.
(..(((((..(....).(((((..((((((((......))))))))..)))))...............)))))..).)
)
))).)))))))))).)))
SIMILARITIES
miRBase
ptc-MIR168b
:
7e-58
PMRD
pts-miR168a
:
1e-62
microPC
miR168
:
1e-62
UniProt
no hits
RFAM
MIR168: 1e-56
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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