ABOUT THIS RECORDspecies: Populus tremula
source: PMRD, original name: ptr-miR169b
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGATTTGCCGA miRNA* GGCAGGTTTTCCTTGGCTA mismatches: 2 bulges: 0 |
pre-miRNA
CAGCCAAGGATGATTTGCCGACGACTCAGTTTTTGCTTCCATATGGTAGGAGAGATGAAGAGGTTGGCAGGTTTTCCTTGGCTA
dot-bracket secondary structure
.(((((((((.(((((((((((..((..((((((.((.((....)).)).))))))..))..))))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAAGGATGATTTGCCGACGACTCAGTTTTTGCTTCCATATGGTAGGAGAGATGAAGAGGTTGGCAGGTTTTCCTTGGCTA
dot-bracket secondary structure
.(((((((((.(((((((((((..((..((((((.((.((....)).)).))))))..))..))))))))))).))))))))).
SIMILARITIES| miRBase ptc-MIR169c: 5e-33 PMRD ptc-miR169c: 5e-33 microPC miR169: 0.000004 | UniProt no hits RFAM MIR169_2: 1e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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