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ABOUT THIS RECORD
ID:
MNEST054370
species:
Populus tremuloides
source:
PMRD, original name:
pts-miR156b
Taxonomy by NCBI:
Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCATCTAAGCTAAATGTCAAA
mismatches:
5
bulges:
3
View larger
pre-miRNA
GT
GCATCTAAGCTAAATGTCAAA
CTAGATACTGACCTTCACTTAATTTGTTAAGATGAATACATCGCTTCAGCAGTAAGTCATCTGGATGGAATTGAAGT
CATTCCCCTTTGATGTTCTTAACAGCTGAAACTCTTGAAAGTAACTGCTACCATCAGTGTGACGTCAAGGTATGCACTTGAGAGTCAGTTGACGGTTGCT
CAGTCCGCCAATACTCTGATGAAGCAAGTGGTGAGTTTTGGGGTATAACTTGCAGCACAGACTGAGTGGTGTGATTTGTATGCATGGGTTGTTCAAATGA
AATAGATTGCGGTTCACGTGAACCCCATGAATTGTT
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
((
((.(((...((...(((((((
(..((.(((.(((...((((..........((((....))))..((((((..((((.((((.((..(((((.(....
))))))))...))))..))))...))))))........))))...((((..((((((.(((((.(((((.......)))))..))).((((.(((.....
....))).)))))).)))))).))))...))).))).))...((((((.(..((.(((.......))).))..).)))))).((((((..(((((..(((
(...(....)..))))..)))))))))))....)))
)))))....))..)))))))
SIMILARITIES
miRBase
far-MIR529
:
0.0003
PMRD
pts-miR157
:
0
microPC
miR157
:
0.0003
UniProt
no hits
RFAM
no hits
Identical with:
pts-miR157
from PMRD (
MNEST054372
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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