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ABOUT THIS RECORD

ID: MNEST054372
species: Populus tremuloides
miRNA family: MIR157
source: PMRD, original name: pts-miR157

Taxonomy by NCBI:
Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCATCTAAGCTAAATGTCAAAC

mismatches: 5
bulges: 3
View larger
pre-miRNA
 GTGCATCTAAGCTAAATGTCAAACTAGATACTGACCTTCACTTAATTTGTTAAGATGAATACATCGCTTCAGCAGTAAGTCATCTGGATGGAATTGAAGT
CATTCCCCTTTGATGTTCTTAACAGCTGAAACTCTTGAAAGTAACTGCTACCATCAGTGTGACGTCAAGGTATGCACTTGAGAGTCAGTTGACGGTTGCT
CAGTCCGCCAATACTCTGATGAAGCAAGTGGTGAGTTTTGGGGTATAACTTGCAGCACAGACTGAGTGGTGTGATTTGTATGCATGGGTTGTTCAAATGA
AATAGATTGCGGTTCACGTGAACCCCATGAATTGTTTGACAGAAGAGAGAGAGCAC

dot-bracket secondary structure
((((.(((...((...((((((((..((.(((.(((...((((..........((((....))))..((((((..((((.((((.((..(((((.(....
))))))))...))))..))))...))))))........))))...((((..((((((.(((((.(((((.......)))))..))).((((.(((.....
....))).)))))).)))))).))))...))).))).))...((((((.(..((.(((.......))).))..).)))))).((((((..(((((..(((
(...(....)..))))..)))))))))))....))))))))....))..)))))))


SIMILARITIES
miRBase far-MIR529: 0.0003

PMRD pts-miR156b: 0

microPC miR157: 0.0003		UniProt no hits

RFAM no hits

Identical with: pts-miR156b from PMRD (MNEST054370)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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