ABOUT THIS RECORDspecies: Populus tremuloides
miRNA family: MIR168
source: PMRD, original name: pts-miR168a
Taxonomy by NCBI:
Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGA mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGAAAGAGAATTGGATC
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((((..(....).(((((..((((((((......))))))))..)))))...............)))))..).))
))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGAAAGAGAATTGGATC
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((((..(....).(((((..((((((((......))))))))..)))))...............)))))..).))
))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168b: 7e-58 PMRD ptr-miR168: 1e-62 microPC miR168: 1e-62 | UniProt no hits RFAM MIR168: 1e-56 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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