ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR444
source: PMRD, original name: pvi-miR444
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCAAGCTTGCTGCC miRNA* TGACAAGCTAGAGGCAGCAAC mismatches: 3 bulges: 0 |
pre-miRNA
GCAAGCGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCAGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTT
GTCTCAAGCTTGCTGCCTCCCTTTGCC
dot-bracket secondary structure
(((((.((.(((..((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).))))))))))))
))))).))))))..))).)).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GCAAGCGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCAGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTT
GTCTCAAGCTTGCTGCCTCCCTTTGCC
dot-bracket secondary structure
(((((.((.(((..((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).))))))))))))
))))).))))))..))).)).))))).
SIMILARITIES| miRBase ssp-MIR444c: 4e-47 PMRD osa-miR444f: 7e-18 microPC miR444: 3e-45 | UniProt no hits RFAM MIR444: 2e-52 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
