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ABOUT THIS RECORD
ID:
MNEST054377
species:
Phaseolus vulgaris
miRNA family:
MIR159
source:
PMRD, original name:
pvu-miR159
Taxonomy by NCBI:
Phaseolus vulgaris
Phaseolus
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTGAAGTCCAATTG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GTG
GAGCTCCTTGAAGTCCAATTG
AGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAGCATGTTTTGTGGTAGTC
TTGTGGCTTCCATATCTGGGGAGCTTCATCTGCCTCTATAGTATCATCCTTC
TTTGGATTGAAGGGAGCTCTA
C
dot-bracket secondary structure
(((
(((((((((..(((((((..(
(((((..(((((((..(((.(((((.(((((.((((((..((((((..(((((((...........)).)))))..
))))))..)))))).))))).))))).)))..)))....))))..)))))).
.)))))))..)))))))))))
)
SIMILARITIES
miRBase
pvu-MIR159a
:
7e-96
PMRD
pvu-miR159
:
7e-96
microPC
miR159
:
5e-69
UniProt
no hits
RFAM
MIR159: 1e-20
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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