ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR482
source: PMRD, original name: pvu-miR482
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCAATTCCGCCCATTCC miRNA* AATGGGCTGATTGGGAAGCAA mismatches: 2 bulges: 1 |
pre-miRNA
GGGATCCGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCA
TTCCTATGATCTCTGATGATTCTTTCCTTTCCT
dot-bracket secondary structure
((((...((((...((((..((((((..(..(((((((((((.((((((((((.(((..((((.........))))...))).))))))))))..)))))
))))))..)..))))))..))))))))..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
GGGATCCGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCA
TTCCTATGATCTCTGATGATTCTTTCCTTTCCT
dot-bracket secondary structure
((((...((((...((((..((((((..(..(((((((((((.((((((((((.(((..((((.........))))...))).))))))))))..)))))
))))))..)..))))))..))))))))..))))
SIMILARITIES| miRBase pvu-MIR482: 1e-71 PMRD pvu-miR482: 1e-71 microPC miR482: 6e-37 | UniProt no hits RFAM no hits |
Identical with: pvu-MIR482 from miRBase (MNEST041028) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
