ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR2118
source: PMRD, original name: pvu-miR2118
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCCGATTCCACCCATTCCTA miRNA* GGAGATGGGTGGGTTGGTAAAA mismatches: 0 bulges: 2 |
pre-miRNA
AAGGAAGTATGGGAGATGGGTGGGTTGGTAAAACATAAGAGAATGAATATTTCTCACTCTGTTTTGCCGATTCCACCCATTCCTATGATTTCCTT
dot-bracket secondary structure
(((((((((((((((.(((((((((((((((((((...(((((.......)))))....))))))))))).))))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
AAGGAAGTATGGGAGATGGGTGGGTTGGTAAAACATAAGAGAATGAATATTTCTCACTCTGTTTTGCCGATTCCACCCATTCCTATGATTTCCTT
dot-bracket secondary structure
(((((((((((((((.(((((((((((((((((((...(((((.......)))))....))))))))))).))))))))))))))).))))))))
SIMILARITIES| miRBase pvu-MIR2118: 3e-44 PMRD vun-miR2118: 0.000000000001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
