ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR162
source: PMRD, original name: rco-miR162
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAAGATTTTGTTGTGAAACAAAAATAAAACGCATGAATCGATCGATAAACCTCTGCATCCAGC
dot-bracket secondary structure
..(((((.((((.((((.(((((((.((((...)))).(((((((....)))))))................))))))).)))).)))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAAGATTTTGTTGTGAAACAAAAATAAAACGCATGAATCGATCGATAAACCTCTGCATCCAGC
dot-bracket secondary structure
..(((((.((((.((((.(((((((.((((...)))).(((((((....)))))))................))))))).)))).)))).))))).
SIMILARITIES| miRBase rco-MIR162: 1e-49 PMRD ghr-miR162a: 1e-18 microPC miR162: 2e-26 | UniProt no hits RFAM MIR162_2: 2e-48 |
Identical with: rco-MIR162 from miRBase (MNEST040342) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
