ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR168
source: PMRD, original name: rco-miR168
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTTTTCTATTTCTAATGATTTCCAGGCGGCGAAAAGTTATTGGTCAAGATTAG
ATGGAAAGTGAATTGGATCCCGCCTTGCATCAACTGAATCGAAGACCGGGGTGAAG
dot-bracket secondary structure
(((((..((((((.(.(((((.((((((((((.(((((.(..(((.(((((((....((((((.....((((..(((.....))).)))).....)))))
).))))))).)))..).))))).)))))))))).))))).).)))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTTTTCTATTTCTAATGATTTCCAGGCGGCGAAAAGTTATTGGTCAAGATTAG
ATGGAAAGTGAATTGGATCCCGCCTTGCATCAACTGAATCGAAGACCGGGGTGAAG
dot-bracket secondary structure
(((((..((((((.(.(((((.((((((((((.(((((.(..(((.(((((((....((((((.....((((..(((.....))).)))).....)))))
).))))))).)))..).))))).)))))))))).))))).).)))))).)))))..
SIMILARITIES| miRBase rco-MIR168: 3e-70 PMRD ath-miR168b: 1e-16 microPC miR168: 0.0000000001 | UniProt no hits RFAM MIR168: 6e-84 |
Identical with: rco-MIR168 from miRBase (MNEST040355) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
