ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR408
source: PMRD, original name: rco-miR408
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* CTGGGAACAGGCAGTGCATGG mismatches: 5 bulges: 0 |
pre-miRNA
AGAAGGTACAGAAACAGACAGACAAAGACTGGGAACAGGCAGTGCATGGATGGGGCTACTAACAGAAAACATCTGTTTTGGCTCTACCCCTGCACTGCCT
CTTCCCTGGCTTCCGGTTCTTCTTTTTGT
dot-bracket secondary structure
.......((((((..(((..(((.(((...(((((.((((((((((.((.((((((((..((((((.....)))))).)))))))).)).))))))))))
.)))))...)))...)))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AGAAGGTACAGAAACAGACAGACAAAGACTGGGAACAGGCAGTGCATGGATGGGGCTACTAACAGAAAACATCTGTTTTGGCTCTACCCCTGCACTGCCT
CTTCCCTGGCTTCCGGTTCTTCTTTTTGT
dot-bracket secondary structure
.......((((((..(((..(((.(((...(((((.((((((((((.((.((((((((..((((((.....)))))).)))))))).)).))))))))))
.)))))...)))...)))..)))))))))
SIMILARITIES| miRBase rco-MIR408: 4e-47 PMRD ptc-miR408: 2e-21 microPC miR408: 8e-21 | UniProt no hits RFAM MIR408: 1e-62 |
Identical with: rco-MIR408 from miRBase (MNEST040391) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
