ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR535
source: PMRD, original name: rco-miR535
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCTCCCTATCGTTGTCAAT mismatches: 2 bulges: 0 |
pre-miRNA
CATCATTTGTTGACAACGAGAGAGAGCACGCTTGTTAGCCTTCATGTAAGGAACATGGTTGCACACCAGCGTGCTCCCTATCGTTGTCAAT
dot-bracket secondary structure
........(((((((((((.((.(((((((((.((..((..((((((.....))))))..))..)).))))))))).)).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CATCATTTGTTGACAACGAGAGAGAGCACGCTTGTTAGCCTTCATGTAAGGAACATGGTTGCACACCAGCGTGCTCCCTATCGTTGTCAAT
dot-bracket secondary structure
........(((((((((((.((.(((((((((.((..((..((((((.....))))))..))..)).))))))))).)).)))))))))))
SIMILARITIES| miRBase rco-MIR535: 1e-43 PMRD vvi-miR535c: 0.000000004 microPC miR535: 0.00000002 | UniProt no hits RFAM MIR535: 2e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
