ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: PMRD, original name: sbi-miR169i
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGACTTGCCTA miRNA* GGCAGGTCTTCTTGGCTAGC mismatches: 0 bulges: 1 |
pre-miRNA
GATGGAGAGCCCCCTTTTGCTAGCCAAGAATGACTTGCCTATGCATGCCCTCTGTTGGCAATTCCTCCAGCCATGGAGATTGCACAAGGTGAATTTTTGC
GGCATAGATGATGGATGCAATGTGGCTGCATGGGCAGGTCTTCTTGGCTAGCCAGAGTGCTCTCATCCA
dot-bracket secondary structure
((((.(((((...((((.((((((((((((.((((((((((((((.(((.(((.((((((((..(((((....)))))))))).))).).))....((((
(.(((.....)))..)))))...))))))))))))))))))))))))))))).)))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GATGGAGAGCCCCCTTTTGCTAGCCAAGAATGACTTGCCTATGCATGCCCTCTGTTGGCAATTCCTCCAGCCATGGAGATTGCACAAGGTGAATTTTTGC
GGCATAGATGATGGATGCAATGTGGCTGCATGGGCAGGTCTTCTTGGCTAGCCAGAGTGCTCTCATCCA
dot-bracket secondary structure
((((.(((((...((((.((((((((((((.((((((((((((((.(((.(((.((((((((..(((((....)))))))))).))).).))....((((
(.(((.....)))..)))))...))))))))))))))))))))))))))))).)))).)))))))))..
SIMILARITIES| miRBase sbi-MIR169i: 6e-93 PMRD osa-miR169n: 6e-16 microPC no hits | UniProt no hits RFAM MIR169_5: 1e-91 |
Identical with: sbi-MIR169i from miRBase (MNEST042537) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
