ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: PMRD, original name: sbi-miR399c
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GGGTACATCTCCTTTGGCACA mismatches: 2 bulges: 0 |
pre-miRNA
CATATGCTGAGCATGAATTACAGGGTACATCTCCTTTGGCACAGATGCATGCAGCAGAATGCATATATGCATATGCGAAACTGTCGAGCGTGCCAAAGGA
GAATTGCCCTGCGATTCTAGGCTCTGCAAT
dot-bracket secondary structure
....(((.((((..((((..(((((((..(((((((((((((..(((((((..((.....))...)))))))...(((.....)))...)))))))))))
))..)))))))..))))...)))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CATATGCTGAGCATGAATTACAGGGTACATCTCCTTTGGCACAGATGCATGCAGCAGAATGCATATATGCATATGCGAAACTGTCGAGCGTGCCAAAGGA
GAATTGCCCTGCGATTCTAGGCTCTGCAAT
dot-bracket secondary structure
....(((.((((..((((..(((((((..(((((((((((((..(((((((..((.....))...)))))))...(((.....)))...)))))))))))
))..)))))))..))))...)))).)))..
SIMILARITIES| miRBase sbi-MIR399c: 9e-70 PMRD zma-miR399c: 0.00000000000003 microPC miR399: 0.000002 | UniProt no hits RFAM mir-399: 4e-57 |
Identical with: sbi-MIR399c from miRBase (MNEST042591) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
