ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: PMRD, original name: sbi-miR399g
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAAATTTGCCCCG miRNA* GGGCAACTTCTCCTTTGGCAGA mismatches: 2 bulges: 1 |
pre-miRNA
CCAGATGTGCACTTGCATTGCTGGGCAACTTCTCCTTTGGCAGATGNGCAATGNGCTCNGACCCTGGGGCTTCTTCCGCGCCTACTGCCAAAGGAAATTT
GCCCCGGAATTCACCTGCACAGCCA
dot-bracket secondary structure
.....((((((..((.(((.(.((((((.((.(((((((((((....((.....)).........((.((.......)).))..))))))))))))).))
)))).).))).))..))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCAGATGTGCACTTGCATTGCTGGGCAACTTCTCCTTTGGCAGATGNGCAATGNGCTCNGACCCTGGGGCTTCTTCCGCGCCTACTGCCAAAGGAAATTT
GCCCCGGAATTCACCTGCACAGCCA
dot-bracket secondary structure
.....((((((..((.(((.(.((((((.((.(((((((((((....((.....)).........((.((.......)).))..))))))))))))).))
)))).).))).))..))))))....
SIMILARITIES| miRBase sbi-MIR399g: 2e-61 PMRD zma-miR399f: 0.0000000000004 microPC no hits | UniProt no hits RFAM mir-399: 8e-49 |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
