ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: PMRD, original name: sbi-miR399h
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCGGTTCTCCTCTGGCATG mismatches: 2 bulges: 0 |
pre-miRNA
AGTGTTCAGGGTAAGAATCACAGTGCGGTTCTCCTCTGGCATGGAGGCCAACATAGCAGGCATTGGAGAATGCACAGCGCTATCGCCATCCCTGCCAAAG
GAGAATTGCCCTGCCATTCGGTATAACCCTGG
dot-bracket secondary structure
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((..(((((....))))).....))))).))).))).))))).))
))))))))).)))..))))......)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGTGTTCAGGGTAAGAATCACAGTGCGGTTCTCCTCTGGCATGGAGGCCAACATAGCAGGCATTGGAGAATGCACAGCGCTATCGCCATCCCTGCCAAAG
GAGAATTGCCCTGCCATTCGGTATAACCCTGG
dot-bracket secondary structure
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((..(((((....))))).....))))).))).))).))))).))
))))))))).)))..))))......)))))).
SIMILARITIES| miRBase sbi-MIR399h: 6e-71 PMRD osa-miRf10978-akr: 8e-24 microPC miR399: 0.00003 | UniProt no hits RFAM mir-399: 2e-58 |
Identical with: sbi-MIR399h from miRBase (MNEST042596) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
