ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: PMRD, original name: sbi-miR399j
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCGGTTCTCCTCTGGCATG mismatches: 3 bulges: 0 |
pre-miRNA
AGTGCGGTTCTCCTCTGGCATGAACGACGGCTGGAGCAGCTTGCCACATGGCTCGGCCACGGCCCTTGCTTGCCAAAGGAGAATTGCCCTGCC
dot-bracket secondary structure
((.(((((((((((.(((((....(((.(((((..((.....(((....)))...))..))))).)))..))))).))))))))))).))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
AGTGCGGTTCTCCTCTGGCATGAACGACGGCTGGAGCAGCTTGCCACATGGCTCGGCCACGGCCCTTGCTTGCCAAAGGAGAATTGCCCTGCC
dot-bracket secondary structure
((.(((((((((((.(((((....(((.(((((..((.....(((....)))...))..))))).)))..))))).))))))))))).))...
SIMILARITIES| miRBase sbi-MIR399j: 7e-48 PMRD zma-miR399a: 0.00000002 microPC miR399: 0.00002 | UniProt no hits RFAM mir-399: 1e-46 |
Identical with: sbi-MIR399j from miRBase (MNEST042598) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
