ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR408
source: PMRD, original name: sbi-miR408
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* CAGGGACGAGGCAGAGCATGGG mismatches: 4 bulges: 1 |
pre-miRNA
ACAGGGACGAGGCAGAGCATGGGATGGGGCCATCAACAACAAAATTTCCAATTTCCGTTTGCTTGCCCACAAAATGGAGGGACTTGTCAGGAGAGGTATC
AGGCAGAGAGAAGGTGCCTCCCTGGTGAAATGGTGATGGCCTGAGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCC
TGGCT
dot-bracket secondary structure
.((((((.(((((((.(((.(((...(((((((((.((........(((....(((((((...........))))))).))).(..(((((.((((((((
............)))))))))))))..)..)).)))))))))(((..(((.((((.((...))....))))..)))..))))))))).))))))).))))
))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
ACAGGGACGAGGCAGAGCATGGGATGGGGCCATCAACAACAAAATTTCCAATTTCCGTTTGCTTGCCCACAAAATGGAGGGACTTGTCAGGAGAGGTATC
AGGCAGAGAGAAGGTGCCTCCCTGGTGAAATGGTGATGGCCTGAGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCC
TGGCT
dot-bracket secondary structure
.((((((.(((((((.(((.(((...(((((((((.((........(((....(((((((...........))))))).))).(..(((((.((((((((
............)))))))))))))..)..)).)))))))))(((..(((.((((.((...))....))))..)))..))))))))).))))))).))))
))...
SIMILARITIES| miRBase sbi-MIR408: 3e-114 PMRD sof-miR408c: 9e-31 microPC miR408: 0.0002 | UniProt no hits RFAM MIR408: 0.000000000003 |
Identical with: sbi-MIR408 from miRBase (MNEST042600) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
