ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR437
source: PMRD, original name: sbi-miR437o
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* GTCACTTTTATAACTTTGC mismatches: 1 bulges: 2 |
pre-miRNA
AAGTCACTTTTATAACTTTGCAAGGTTTTTAGAAAAATGCACCATCCTCTACAACATCAAATTAGTTTCATTAAATTCTCTATGAAATATGTCTTGGTAG
TGCATTTATGTGAACCTGTAGCTGTTAATATATTTTTTATAAAAACTTAGTCAAAGTTAGAGAAGTTTGACTTAG
dot-bracket secondary structure
(((((((((((.(((((((((.(((((((((....(((((((...((......((((.......(((((((..........)))))))))))...))..)
))))))(((((.(((........))).))))).......))))))))).).)))))))).))))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
AAGTCACTTTTATAACTTTGCAAGGTTTTTAGAAAAATGCACCATCCTCTACAACATCAAATTAGTTTCATTAAATTCTCTATGAAATATGTCTTGGTAG
TGCATTTATGTGAACCTGTAGCTGTTAATATATTTTTTATAAAAACTTAGTCAAAGTTAGAGAAGTTTGACTTAG
dot-bracket secondary structure
(((((((((((.(((((((((.(((((((((....(((((((...((......((((.......(((((((..........)))))))))))...))..)
))))))(((((.(((........))).))))).......))))))))).).)))))))).))))))..)))))..
SIMILARITIES| miRBase sbi-MIR437o: 2e-96 PMRD sbi-miR437g: 5e-26 microPC miR437: 8e-31 | UniProt no hits RFAM no hits |
Identical with: sbi-MIR437o from miRBase (MNEST042614) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
