ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR1435
source: PMRD, original name: sbi-miR1435a
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTTAAGTCAAACTTTTC miRNA* TAAGTTTGACTTAGGAAAAA mismatches: 1 bulges: 0 |
pre-miRNA
GTTGTATTAATGCACCCATCATATTATTTACTCTGTTCCAAATTATAGGTTAATTTAGCTTTTTCTTAAGTCAAACTTTTCTAATTTTGACAATTTTAGA
AAATATATTAACATCTACAAGTTCAAATAAATGCAATACCAACTACCAAACATATTTCATGGAGGATTTAATGAAACAAACTTGATGTTGTAGATGTTGA
TGCATCTTTCTGTAAACTTGGTCAAAGATAAGTTTGACTTAGGAAAAACTAAAGTGACCTCTCATTCGGAACCTATGGAGTACTTCA
dot-bracket secondary structure
..((((....))))..............(((((((((((.(((.(.((((((.(((((.(((((((((((((((((((.(((....(((((.....((((
((((.(((((((((((((((..((((.......((.((....((.(((...........)))))....)).))........))))..)))))))))))))
)).)).))))))........)))))))).)))))))))))))))))))))))).)))))).).))).)))))....)))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
GTTGTATTAATGCACCCATCATATTATTTACTCTGTTCCAAATTATAGGTTAATTTAGCTTTTTCTTAAGTCAAACTTTTCTAATTTTGACAATTTTAGA
AAATATATTAACATCTACAAGTTCAAATAAATGCAATACCAACTACCAAACATATTTCATGGAGGATTTAATGAAACAAACTTGATGTTGTAGATGTTGA
TGCATCTTTCTGTAAACTTGGTCAAAGATAAGTTTGACTTAGGAAAAACTAAAGTGACCTCTCATTCGGAACCTATGGAGTACTTCA
dot-bracket secondary structure
..((((....))))..............(((((((((((.(((.(.((((((.(((((.(((((((((((((((((((.(((....(((((.....((((
((((.(((((((((((((((..((((.......((.((....((.(((...........)))))....)).))........))))..)))))))))))))
)).)).))))))........)))))))).)))))))))))))))))))))))).)))))).).))).)))))....)))))).....
SIMILARITIES| miRBase sbi-MIR1435a: 4e-163 PMRD sbi-miR437g: 4e-18 microPC miR437: 0.00000000002 | UniProt no hits RFAM no hits |
Identical with: sbi-MIR1435a from miRBase (MNEST042631) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
