ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR157a
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAT miRNA* CTTGTTTATGTTGCTTCAG mismatches: 4 bulges: 2 |
pre-miRNA
TTGACAGAAGATAGAGAGCATGCTTAACCCACATCTTGTTTATGTTGCTTCAG
dot-bracket secondary structure
.(((.((((.(((((.((.(((.........))).)).))))).)).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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TTGACAGAAGATAGAGAGCATGCTTAACCCACATCTTGTTTATGTTGCTTCAG
dot-bracket secondary structure
.(((.((((.(((((.((.(((.........))).)).))))).)).))))).
SIMILARITIES| miRBase vvi-MIR156i: 0.0001 PMRD sly-miR157b: 3e-24 microPC miR157: 0.0001 | UniProt no hits RFAM no hits |
Identical with: sly-miR157b from PMRD (MNEST054536) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
