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ABOUT THIS RECORD

ID: MNEST054536
species: Solanum lycopersicum
source: PMRD, original name: sly-miR157b

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 GCTTCCTACCAGAGAGAGTCAATACCCTTTTTCTTTTGCTATCCTCTTCAA

mismatches: 5
bulges: 34
View larger
pre-miRNA
 TTGACAGAAGATAGAGAGCATGCTTAACCCACATCTTGTTTATGTTGCTTCAGAAAGTAGGTTATTTGGCTGCCATTGATGCTGATGCTTCTTCAGCCCA
AATTTTCTCCATGAGAGTCATATGTAATTTTACGGCGGCGCTCATTGTGACCTGCCAAACGCCTTCGGCAACTCCTCTTAGCATCATCAAACTCTGCTAA
CAGATGAAATCTGCTACATTGCTGACAGAATCGCTTCTGGAGTCCACTAATAAGTACTATTGGAGACTTTGAATGGAACTCACACACCTTGTGGCGGCGA
TGGTATGGCTTGGCATCTGCCATATCTGCAGTGCACTGATCGACCTGGCAAGAAGGATGTGCCGACCCTTCACCAACTAGCTTCCTACCAGAGAGAGTCA
ATACCCTTTTTCTTTTGCTATCCTCTTCAA

dot-bracket secondary structure
.(((.(((.(((((.((((..(((....(((((.((((((..((..(((((((((.(((((((((..(((((((......(((((.......)))))...
.((((((.....))))))...............)))))).).....))))))))).......(((((((((.......(((((...(((...((((....
)))))))....)))))..))))))).))......))))))))).))..))))))..(((((.((....)).))))).............))))).)))..
((((..((.(((((((((((((..((..(((....)))...))..)))).)))......)))))).))...))))....))))......((((((((...
.....))))))))....))))).)))))).


SIMILARITIES
miRBase no hits

PMRD iba-miR157: 5e-34

microPC no hits		UniProt sp|Q38741|SBP1_ANTMA: 1e-39

RFAM no hits

Identical with: sly-miR157a from PMRD (MNEST054535)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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