ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR158a
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCCAAATGTAGACAAAGCA miRNA* CACATCA mismatches: 18 bulges: 0 |
pre-miRNA
TTCCCTTTCACATCAAGCAATTGCAAATGATCCAAATGTAGACAAAGCAA
dot-bracket secondary structure
...........((((.((....))...))))...................
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TTCCCTTTCACATCAAGCAATTGCAAATGATCCAAATGTAGACAAAGCAA
dot-bracket secondary structure
...........((((.((....))...))))...................
SIMILARITIES| miRBase ath-MIR158b: 0.0005 PMRD sly-miR158b: 2e-22 microPC no hits | UniProt no hits RFAM no hits |
Identical with: sly-miR158b from PMRD (MNEST054539) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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