ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR166
source: PMRD, original name: sly-miR166a
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* AGAATGTCGTCTGGTTCGAGA mismatches: 3 bulges: 0 |
pre-miRNA
GTTGAGGAGAATGTCGTCTGGTTCGAGATCTTTCATAAGAAAGGTAAATGAATGACAAGTTTTCATATATGTATCGTGAATGATTTCGGACCAGGCTTCA
TTCCCCTCAAC
dot-bracket secondary structure
(((((((.(((((..(((((((((((((((.(((((..((.(.(((.(((((.........))))).))).).))))))).)))))))))))))))..))
))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
GTTGAGGAGAATGTCGTCTGGTTCGAGATCTTTCATAAGAAAGGTAAATGAATGACAAGTTTTCATATATGTATCGTGAATGATTTCGGACCAGGCTTCA
TTCCCCTCAAC
dot-bracket secondary structure
(((((((.(((((..(((((((((((((((.(((((..((.(.(((.(((((.........))))).))).).))))))).)))))))))))))))..))
))).)))))))
SIMILARITIES| miRBase sly-MIR166a: 2e-58 PMRD vvi-miR166g: 0.0000000000004 microPC miR166: 0.000005 | UniProt no hits RFAM mir-166: 0.000000000007 |
Identical with: sly-MIR166a from miRBase (MNEST041531) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
