ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR169
source: PMRD, original name: sly-miR169a
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTTTTTGGCTATA mismatches: 3 bulges: 0 |
pre-miRNA
GGTCTATAAGGTTTGCATGAAGTTGAAGAGAGTCAAGTTGCAGCCAAGGATGACTTGCCGGACCAAAAGTTGTGACCATTTTCTAGTTCCGGCAAGTTGT
TTTTGGCTATAAGTTTGCTCTCTTCTTCTCATGTTATCCTCGTTAGACC
dot-bracket secondary structure
((((((..(((...((((((.(..(((((((((.((.(((.(((((((((..((((((((((.(.(((((.......)))))...).))))))))))..)
)))))))).))).)).)))))))))..)))))))...)))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
GGTCTATAAGGTTTGCATGAAGTTGAAGAGAGTCAAGTTGCAGCCAAGGATGACTTGCCGGACCAAAAGTTGTGACCATTTTCTAGTTCCGGCAAGTTGT
TTTTGGCTATAAGTTTGCTCTCTTCTTCTCATGTTATCCTCGTTAGACC
dot-bracket secondary structure
((((((..(((...((((((.(..(((((((((.((.(((.(((((((((..((((((((((.(.(((((.......)))))...).))))))))))..)
)))))))).))).)).)))))))))..)))))))...)))...))))))
SIMILARITIES| miRBase sly-MIR169a: 5e-81 PMRD vvi-miR169s: 0.000002 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_2: 0.000009 |
Identical with: sly-MIR169a from miRBase (MNEST041534) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
